Variant report

Variant	rs1452808
Chromosome Location	chr8:78074195-78074196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11778781	0.86[ASN][1000 genomes]
rs12677707	0.92[ASN][1000 genomes]
rs12680110	0.93[ASN][1000 genomes]
rs13265822	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13265936	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13267803	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13268651	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13269590	0.93[ASN][1000 genomes]
rs1377246	0.94[ASN][1000 genomes]
rs1377247	0.80[EUR][1000 genomes]
rs1377248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1452809	0.80[EUR][1000 genomes]
rs1452832	0.86[ASN][1000 genomes]
rs1982434	0.80[EUR][1000 genomes]
rs28719703	0.86[ASN][1000 genomes]
rs4147343	0.96[ASN][1000 genomes]
rs7006189	0.85[ASN][1000 genomes]
rs7016358	0.96[ASN][1000 genomes]
rs7016911	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78073600-78074600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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