Variant report

Variant	rs1377559
Chromosome Location	chr11:59293254-59293255
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10896983	0.84[ASN][1000 genomes]
rs11229977	0.90[AMR][1000 genomes]
rs12278052	0.90[AMR][1000 genomes]
rs12805562	0.91[ASN][1000 genomes]
rs1453531	0.87[AMR][1000 genomes]
rs1964502	0.87[AMR][1000 genomes]
rs7120079	0.81[AMR][1000 genomes]
rs7945858	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59291600-59294400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:59293000-59295200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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