Variant report

Variant	rs7945858
Chromosome Location	chr11:59317237-59317238
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59316767..59319873-chr11:59382197..59385318,7	K562	blood:
2	chr11:59313248..59321957-chr11:59433786..59439304,14	K562	blood:
3	chr11:59316022..59320614-chr11:59433786..59439120,8	K562	blood:
4	chr11:59316717..59319546-chr11:59322343..59325398,3	MCF-7	breast:
5	chr11:59317031..59320121-chr11:59331388..59333967,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255139	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255008	Chromatin interaction

rs_ID	r²[population]
rs10896979	0.90[YRI][hapmap]
rs10896980	0.83[CEU][hapmap];0.81[YRI][hapmap]
rs11229977	0.91[YRI][hapmap]
rs1377559	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs518427	0.83[CEU][hapmap];0.86[YRI][hapmap]
rs7116484	0.83[CEU][hapmap];0.83[CHB][hapmap];0.86[YRI][hapmap]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59316200-59320400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr11:59316200-59320400	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:59316400-59317400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr11:59316400-59317400	Flanking Active TSS	Dnd41	blood
5	chr11:59316400-59317400	Flanking Active TSS	Hela-S3	cervix
6	chr11:59316400-59317400	Flanking Active TSS	K562	blood
7	chr11:59316400-59320200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:59316400-59320400	Active TSS	H1 Cell Line	embryonic stem cell
9	chr11:59316400-59320400	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr11:59316400-59320600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr11:59316400-59321200	Active TSS	H9 Cell Line	embryonic stem cell
12	chr11:59316600-59317400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:59316600-59317400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr11:59316600-59317400	Flanking Active TSS	NHEK	skin
15	chr11:59316600-59317400	Flanking Active TSS	Osteobl	bone
16	chr11:59316600-59319200	Active TSS	Brain Germinal Matrix	brain
17	chr11:59316600-59319800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr11:59316600-59319800	Active TSS	Brain Angular Gyrus	brain
19	chr11:59316600-59320200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:59316600-59320200	Active TSS	HSMM	muscle
21	chr11:59316600-59320400	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr11:59316800-59317400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:59316800-59317400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr11:59316800-59317400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr11:59316800-59317400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:59316800-59317400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:59316800-59317400	Flanking Active TSS	NHLF	lung
28	chr11:59316800-59318000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:59316800-59319200	Active TSS	Fetal Brain Female	brain
30	chr11:59316800-59319800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:59316800-59319800	Active TSS	Brain Anterior Caudate	brain
32	chr11:59316800-59319800	Active TSS	Brain Hippocampus Middle	brain
33	chr11:59316800-59320000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:59316800-59320000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:59316800-59320000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:59316800-59320200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:59316800-59320200	Active TSS	Fetal Kidney	kidney
38	chr11:59316800-59320600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:59317000-59317400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:59317000-59317400	Active TSS	Primary T cells fromperipheralblood	blood
41	chr11:59317000-59317400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr11:59317000-59317400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:59317000-59317400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr11:59317000-59317400	Flanking Active TSS	Brain Cingulate Gyrus	brain
45	chr11:59317000-59317400	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr11:59317000-59317400	Enhancers	Colon Smooth Muscle	Colon
47	chr11:59317000-59317400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr11:59317000-59317400	Flanking Active TSS	NH-A	brain
49	chr11:59317000-59317600	Active TSS	Primary B cells from cord blood	blood
50	chr11:59317000-59317800	Active TSS	Duodenum Mucosa	Duodenum

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