Variant report

Variant	rs10896980
Chromosome Location	chr11:59259831-59259832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10792245	0.87[ASN][1000 genomes]
rs10896979	0.83[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10896981	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs10896982	0.85[ASN][1000 genomes]
rs11229973	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs11229974	0.82[CEU][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11229975	0.81[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs11229976	0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11229977	0.81[CEU][hapmap];0.88[JPT][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11229978	0.87[ASN][1000 genomes]
rs11229983	0.80[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11600218	0.85[ASN][1000 genomes]
rs11604744	0.84[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12278052	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12574739	0.87[ASN][1000 genomes]
rs12575723	0.82[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs12792238	0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs12801464	0.81[ASN][1000 genomes]
rs12804049	0.87[ASN][1000 genomes]
rs1377559	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1453531	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1545527	0.89[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs17501251	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs1964502	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35271086	0.87[ASN][1000 genomes]
rs61901644	0.87[ASN][1000 genomes]
rs7116107	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs7120079	0.83[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7929779	0.85[ASN][1000 genomes]
rs7945858	0.83[CEU][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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