Variant report

Variant	rs12575723
Chromosome Location	chr11:59277611-59277612
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10792245	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896979	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10896980	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs10896981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10896982	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896983	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11229973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11229974	0.90[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229977	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229978	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600218	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11604744	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12278052	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792238	0.90[CEU][hapmap];0.94[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801464	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12804049	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805562	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1453531	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1545527	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17501251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1964502	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35271086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901644	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116107	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7120079	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929779	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59276000-59278000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:59276000-59278200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:59276000-59279400	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:59276200-59278200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:59276200-59279800	Enhancers	Primary T cells from cord blood	blood
6	chr11:59276600-59277800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:59276600-59277800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:59276600-59278000	Weak transcription	Adipose Nuclei	Adipose
9	chr11:59276600-59278000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:59276600-59278600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:59276800-59277800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:59276800-59277800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:59276800-59278000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:59276800-59278400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:59277000-59278000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:59277400-59278600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:59277600-59278800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr11:59277600-59279000	Enhancers	Dnd41	blood

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