Variant report

Variant	rs12792238
Chromosome Location	chr11:59279192-59279193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10792245	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896979	0.87[JPT][hapmap]
rs10896980	0.83[JPT][hapmap]
rs10896981	0.91[CEU][hapmap];0.94[JPT][hapmap]
rs10896982	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896983	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11229973	0.91[CEU][hapmap];0.94[JPT][hapmap]
rs11229974	0.87[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229975	0.91[CEU][hapmap];0.94[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229976	0.90[CEU][hapmap];0.94[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229977	0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229978	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229983	0.90[CEU][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600218	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11604744	0.94[JPT][hapmap]
rs12278052	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574739	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575723	0.90[CEU][hapmap];0.94[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801464	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12804049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805562	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1453531	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1545527	0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17501251	0.90[CEU][hapmap];0.94[JPT][hapmap]
rs1964502	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35271086	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116107	0.94[JPT][hapmap]
rs7120079	0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929779	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59276000-59279400	Enhancers	Primary hematopoietic stem cells	blood
2	chr11:59276200-59279800	Enhancers	Primary T cells from cord blood	blood
3	chr11:59277800-59279200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:59277800-59279400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr11:59277800-59279400	Enhancers	Fetal Thymus	thymus
6	chr11:59278000-59279200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:59278000-59279600	Enhancers	Adipose Nuclei	Adipose
8	chr11:59278600-59279200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr11:59278600-59279400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr11:59278600-59279800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:59278800-59279600	Enhancers	HUVEC	blood vessel
12	chr11:59279000-59279800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:59279000-59279800	Enhancers	Monocytes-CD14+_RO01746	blood

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