Variant report

Variant	rs35271086
Chromosome Location	chr11:59270299-59270300
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:59270264-59270314	CMK	blood:	n/a
2	chr11:59270264-59270314	HepG2	liver:	n/a
3	chr11:59270264-59270314	IMR90	lung:	fetal
4	chr11:59270264-59270314	PFSK-1	brain:	n/a
5	chr11:59270264-59270314	LNCaP	prostate:	n/a
6	chr11:59270264-59270314	HRPEpiC	eye:	n/a
7	chr11:59270264-59270314	SK-N-MC	brain:	n/a
8	chr11:59270264-59270314	ProgFib	skin:	n/a
9	chr11:59270264-59270314	PANC-1	pancreas:	n/a
10	chr11:59270264-59270314	HAEpiC	amniotic membrane:	n/a
11	chr11:59270264-59270314	SK-N-SH	brain:	n/a
12	chr11:59270264-59270314	Hepatocyte	liver:	n/a
13	chr11:59270264-59270314	NHDF-neo	bronchial:	n/a
14	chr11:59270264-59270314	RPTEC	kidney:	n/a
15	chr11:59270264-59270314	GM12892	blood:	n/a
16	chr11:59270264-59270314	NB4	blood:	n/a
17	chr11:59270264-59270314	Caco-2	colon:	n/a
18	chr11:59270264-59270314	NH-A	brain:	n/a
19	chr11:59270264-59270314	AG04449	skin:	fetal
20	chr11:59270264-59270314	AG09309	skin:	n/a
21	chr11:59270264-59270314	T-47D	breast:	n/a
22	chr11:59270264-59270314	NHBE	bronchial:	n/a
23	chr11:59270264-59270314	K562	blood:	n/a
24	chr11:59270264-59270314	PrEC	prostate:	n/a
25	chr11:59270264-59270314	GM12891	blood:	n/a
26	chr11:59270264-59270314	AG04450	lung:	fetal
27	chr11:59270264-59270314	HMEC	breast:	n/a
28	chr11:59270264-59270314	Hela-S3	cervix:	n/a
29	chr11:59270264-59270314	AG09319	gingival:	n/a
30	chr11:59270264-59270314	GM19239	blood:	n/a
31	chr11:59270264-59270314	HUVEC	blood vessel:	n/a
32	chr11:59270264-59270314	NT2-D1	testis:	n/a
33	chr11:59270264-59270314	SK-N-SH_RA	brain:	n/a
34	chr11:59270264-59270314	HNPCEpiC	eye:	n/a
35	chr11:59270264-59270314	HL-60	blood:	n/a
36	chr11:59270264-59270314	SKMC	muscle:	n/a
37	chr11:59270264-59270314	HRCEpiC	kidney:	n/a
38	chr11:59270264-59270314	MCF10A-Er-Src	breast:	n/a
39	chr11:59270264-59270314	A549	lung:	n/a
40	chr11:59270264-59270314	BE2_C	brain:	n/a
41	chr11:59270264-59270314	AG10803	skin:	n/a
42	chr11:59270264-59270314	HCF	heart:	n/a
43	chr11:59270264-59270314	HRE	kidney:	n/a
44	chr11:59270264-59270314	HPAEpiC	pulmonary alveolar:	n/a
45	chr11:59270264-59270314	HEK293	kidney:	embryo
46	chr11:59270264-59270314	SAEC	small airway:	n/a
47	chr11:59270264-59270314	ovcar-3	ovarian:	n/a
48	chr11:59270264-59270314	ECC-1	luminal epithelium:	n/a
49	chr11:59270264-59270314	HCPEpiC	choroid plexus:	n/a
50	chr11:59270264-59270314	Jurkat	blood:	n/a

No data

Variant related genes	Relation type
OR4D11	CpG island

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10792245	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896982	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896983	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11229974	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229977	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229978	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229983	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600218	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12278052	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792238	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801464	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12804049	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805562	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1453531	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1545527	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1964502	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61901644	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120079	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929779	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59269600-59270400	Flanking Active TSS	GM12878-XiMat	blood

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