Variant report

Variant	rs1378603
Chromosome Location	chr11:18165883-18165884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1001139	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024503	0.84[EUR][1000 genomes]
rs1350098	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1378605	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1378606	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1378607	0.91[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1378608	0.91[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1378611	0.92[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1378612	0.91[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1455787	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1455788	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1455790	0.84[EUR][1000 genomes]
rs1531104	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1531105	0.92[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs1840596	0.84[EUR][1000 genomes]
rs1840597	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs1840598	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs1869788	0.84[EUR][1000 genomes]
rs1968729	0.83[EUR][1000 genomes]
rs1968730	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1968731	0.84[EUR][1000 genomes]
rs1968732	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2014694	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs2078066	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2124375	0.92[CEU][hapmap]
rs2124376	0.91[CEU][hapmap]
rs2124377	0.92[CEU][hapmap];0.80[JPT][hapmap]
rs2198706	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs2246055	0.84[EUR][1000 genomes]
rs2246304	0.91[CEU][hapmap];0.80[JPT][hapmap]
rs2246305	0.92[CEU][hapmap];0.83[JPT][hapmap]
rs2246388	0.91[CEU][hapmap]
rs2246395	0.84[EUR][1000 genomes]
rs2253938	0.91[CEU][hapmap];0.83[JPT][hapmap]
rs2403248	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2445146	0.83[CEU][hapmap];0.80[JPT][hapmap]
rs2445149	0.87[CEU][hapmap]
rs2445164	0.91[CEU][hapmap];0.82[JPT][hapmap]
rs2445165	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs2445180	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2445182	0.92[CEU][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs2445183	0.91[CEU][hapmap];0.80[JPT][hapmap]
rs2445186	0.84[EUR][1000 genomes]
rs2445187	0.84[EUR][1000 genomes]
rs2445196	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2445197	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2445198	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2445199	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2445203	0.86[EUR][1000 genomes]
rs2445204	0.86[EUR][1000 genomes]
rs2445205	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs2445206	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs2445207	0.86[EUR][1000 genomes]
rs2468772	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs2468774	0.83[EUR][1000 genomes]
rs2468820	0.86[EUR][1000 genomes]
rs2468824	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs2468825	0.91[CEU][hapmap];0.83[JPT][hapmap]
rs2468830	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2468831	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2468851	0.84[EUR][1000 genomes]
rs2468853	0.84[EUR][1000 genomes]
rs2860276	0.92[CEU][hapmap];0.80[JPT][hapmap]
rs2860278	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs34114573	0.84[EUR][1000 genomes]
rs4630269	0.81[EUR][1000 genomes]
rs73434204	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	esv11709	chr11:18138662-18200717	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3509521	chr11:18159957-18188401	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3509522	chr11:18159957-18188401	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3367251	chr11:18159957-18196082	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv518373	chr11:18164687-18195348	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv975090	chr11:18164912-18189697	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv16635	chr11:18165268-18194893	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18164000-18166000	Enhancers	HMEC	breast
2	chr11:18164800-18166600	Enhancers	NHEK	skin
3	chr11:18165600-18166200	Enhancers	HUVEC	blood vessel
4	chr11:18165600-18166800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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