Variant report

Variant	rs1379164
Chromosome Location	chr4:62266794-62266795
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10428284	0.89[ASN][1000 genomes]
rs10428398	0.91[ASN][1000 genomes]
rs10428425	0.89[ASN][1000 genomes]
rs13149417	0.83[ASN][1000 genomes]
rs1456864	0.91[ASN][1000 genomes]
rs1456866	0.91[ASN][1000 genomes]
rs17219787	0.91[ASN][1000 genomes]
rs17219815	0.89[ASN][1000 genomes]
rs17226200	0.89[ASN][1000 genomes]
rs17291927	0.91[ASN][1000 genomes]
rs17291934	0.91[ASN][1000 genomes]
rs17291940	0.91[ASN][1000 genomes]
rs17291954	0.89[ASN][1000 genomes]
rs17291961	0.89[ASN][1000 genomes]
rs2219342	0.90[ASN][1000 genomes]
rs4860413	0.90[ASN][1000 genomes]
rs6551626	0.91[ASN][1000 genomes]
rs6818561	0.91[ASN][1000 genomes]
rs6826349	0.91[ASN][1000 genomes]
rs6843210	0.91[ASN][1000 genomes]
rs6843417	0.91[ASN][1000 genomes]
rs6843523	0.91[ASN][1000 genomes]
rs7654021	0.91[ASN][1000 genomes]
rs7670645	0.91[ASN][1000 genomes]
rs7672850	0.91[ASN][1000 genomes]
rs7672885	0.91[ASN][1000 genomes]
rs7683174	0.91[ASN][1000 genomes]
rs7688582	0.91[ASN][1000 genomes]
rs7698242	0.91[ASN][1000 genomes]
rs7698634	0.91[ASN][1000 genomes]
rs9654273	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879076	chr4:62251077-62354791	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62254600-62273400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:62263400-62267400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:62264200-62268000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:62264600-62273200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:62265200-62267800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62265400-62267000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:62265600-62267200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:62265800-62273200	Weak transcription	Brain Angular Gyrus	brain
9	chr4:62266400-62266800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:62266400-62273600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:62266600-62267400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:62266600-62267600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:62266600-62274000	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links