Variant report

Variant	rs1379166
Chromosome Location	chr4:62310275-62310276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1037671	0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10517536	0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1350247	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1379167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1456867	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1456875	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1456876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1456877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1456878	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1531204	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1845582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124795	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124796	0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs2606712	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2606714	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2606715	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2606716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2606717	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2606718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2606720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2643035	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2643037	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2643038	0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2643039	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2643040	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs335274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335275	0.83[AMR][1000 genomes]
rs335276	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335280	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335281	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs335282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335284	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335339	0.91[AMR][1000 genomes]
rs335340	0.91[AMR][1000 genomes]
rs335343	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335344	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335346	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335347	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6551630	0.83[AMR][1000 genomes]
rs6814707	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6834543	0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7683598	0.80[AMR][1000 genomes]
rs7687816	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7693679	0.83[AMR][1000 genomes]
rs991586	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs991587	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs991588	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879076	chr4:62251077-62354791	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2753138	chr4:62271444-62442507	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62294000-62328000	Weak transcription	Fetal Stomach	stomach
2	chr4:62308200-62312000	Enhancers	Fetal Intestine Small	intestine
3	chr4:62308800-62310400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62309200-62311600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:62309400-62310400	Enhancers	Fetal Heart	heart
6	chr4:62309400-62310600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:62309400-62310600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:62309400-62310600	Enhancers	Hela-S3	cervix
9	chr4:62309600-62311000	Enhancers	Stomach Mucosa	stomach
10	chr4:62309600-62314200	Enhancers	Fetal Intestine Large	intestine
11	chr4:62309800-62310400	Enhancers	Brain Angular Gyrus	brain
12	chr4:62309800-62310600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:62309800-62310800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:62309800-62311000	Enhancers	NHEK	skin
15	chr4:62310000-62310800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:62310000-62311800	Enhancers	Duodenum Mucosa	Duodenum
17	chr4:62310000-62312000	Enhancers	Small Intestine	intestine
18	chr4:62310000-62312600	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:62310200-62310400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr4:62310200-62310400	Enhancers	NH-A	brain
21	chr4:62310200-62310600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:62310200-62311200	Enhancers	HMEC	breast
23	chr4:62310200-62312600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:62310200-62312600	Weak transcription	Brain Substantia Nigra	brain
25	chr4:62310200-62313800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links