Variant report

Variant	rs1382891
Chromosome Location	chr2:168055000-168055001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11886197	0.86[EUR][1000 genomes]
rs11887110	0.93[EUR][1000 genomes]
rs11887798	0.86[EUR][1000 genomes]
rs11888928	0.93[EUR][1000 genomes]
rs11891282	0.93[EUR][1000 genomes]
rs11902552	0.86[EUR][1000 genomes]
rs11903679	0.86[EUR][1000 genomes]
rs16853031	0.86[EUR][1000 genomes]
rs16853215	0.93[EUR][1000 genomes]
rs17492384	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002883	chr2:168023423-168072247	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv583589	chr2:168024328-168073830	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv583590	chr2:168024328-168075621	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv997489	chr2:168025002-168072247	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1015022	chr2:168027758-168072247	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168049600-168078800	Weak transcription	Right Ventricle	heart
2	chr2:168051600-168056400	Enhancers	Fetal Heart	heart
3	chr2:168052000-168056400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:168053200-168055200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:168053400-168056000	Weak transcription	Fetal Intestine Small	intestine
6	chr2:168053400-168056600	Weak transcription	Left Ventricle	heart
7	chr2:168053400-168057800	Weak transcription	Gastric	stomach
8	chr2:168053600-168056000	Weak transcription	Psoas Muscle	Psoas
9	chr2:168053600-168065800	Weak transcription	HSMMtube	muscle
10	chr2:168053800-168055000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:168053800-168057200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:168054200-168055200	Weak transcription	Fetal Brain Female	brain
13	chr2:168054200-168058400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr2:168054600-168055200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:168054600-168055400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:168054600-168056400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:168054600-168056800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr2:168055000-168055200	Enhancers	NHLF	lung
19	chr2:168055000-168055400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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