Variant report

Variant	rs11886197
Chromosome Location	chr2:168001847-168001848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr2:168001754-168002143	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
XIRP2-AS1	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10497317	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs11887110	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11887798	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11888928	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11891282	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11893684	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11896086	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11902552	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11903679	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11904201	0.87[ASN][1000 genomes]
rs1382891	0.86[EUR][1000 genomes]
rs16852885	0.85[CHB][hapmap]
rs16852917	0.85[CHB][hapmap]
rs16852985	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16853031	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853215	1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17492384	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2390512	0.90[ASN][1000 genomes]
rs4571028	0.90[ASN][1000 genomes]
rs7566346	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7574738	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs995714	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167999400-168002200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:167999600-168002400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
5	chr2:168000600-168003200	Weak transcription	HSMM	muscle
6	chr2:168001000-168008600	Weak transcription	NHLF	lung
7	chr2:168001600-168005400	Weak transcription	Muscle Satellite Cultured Cells	--

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