Variant report

Variant	rs11893684
Chromosome Location	chr2:167980689-167980690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10497317	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11886197	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11887110	0.87[ASN][1000 genomes]
rs11887798	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11888928	0.87[ASN][1000 genomes]
rs11891282	0.90[ASN][1000 genomes]
rs11902552	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11903679	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11904201	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16852985	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853031	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16853215	0.87[ASN][1000 genomes]
rs17492384	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2390512	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4571028	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566346	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574738	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs995714	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167980200-167983600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:167980400-167983600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:167980600-167984200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links