Variant report

Variant	rs10497317
Chromosome Location	chr2:167979741-167979742
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SCN7A-1	chr2:167979319-167981035	NR_046665

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11886197	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs11887110	0.87[ASN][1000 genomes]
rs11887798	0.93[ASN][1000 genomes]
rs11888928	0.87[ASN][1000 genomes]
rs11891282	0.90[ASN][1000 genomes]
rs11893684	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11896086	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11902552	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs11903679	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs11904201	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16852885	0.86[CHB][hapmap]
rs16852917	0.86[CHB][hapmap]
rs16852985	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16852998	0.82[JPT][hapmap]
rs16853031	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs16853215	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17492384	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs2390512	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4571028	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574738	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs995714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167978200-167980200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:167978400-167979800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:167978400-167980200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:167978400-167980400	Enhancers	Primary hematopoietic stem cells	blood
5	chr2:167979400-167980600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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