Variant report

Variant	rs16852998
Chromosome Location	chr2:167991933-167991934
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10497317	0.82[JPT][hapmap]
rs11896086	0.82[JPT][hapmap]
rs11900989	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.90[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11903679	0.83[CHD][hapmap]
rs16852996	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853036	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];0.90[TSI][hapmap];0.86[YRI][hapmap]
rs57291658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57540214	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60303897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432982	1.00[CEU][hapmap]
rs6432983	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs6740242	1.00[CEU][hapmap]
rs7566346	0.82[JPT][hapmap]
rs7574738	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs995714	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167989200-167998600	Weak transcription	Left Ventricle	heart
2	chr2:167989400-167993400	Weak transcription	Psoas Muscle	Psoas
3	chr2:167989800-167993400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:167989800-167994200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:167990200-167992200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:167990200-167992400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:167990200-167992600	Enhancers	HMEC	breast
8	chr2:167990200-167992600	Enhancers	NHDF-Ad	bronchial
9	chr2:167990200-167992600	Enhancers	Osteobl	bone
10	chr2:167990200-167995200	Enhancers	NHLF	lung
11	chr2:167990400-167993400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr2:167990400-167996600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:167991000-167992000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:167991000-167992000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:167991000-167992200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:167991000-167992600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:167991000-167992600	Enhancers	HSMM	muscle
18	chr2:167991000-167992600	Enhancers	NH-A	brain
19	chr2:167991000-167992800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:167991000-167992800	Enhancers	HUVEC	blood vessel
21	chr2:167991000-167993800	Enhancers	Primary hematopoietic stem cells	blood
22	chr2:167991200-167992000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:167991200-167992400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr2:167991400-167992600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr2:167991400-167992600	Enhancers	Fetal Thymus	thymus
26	chr2:167991400-167992800	Enhancers	Fetal Lung	lung
27	chr2:167991600-167992000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:167991600-167992000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:167991600-167993400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr2:167991600-167997000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:167991800-167992400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr2:167991800-167992600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr2:167991800-167992600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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