Variant report

Variant	rs60303897
Chromosome Location	chr2:167990990-167990991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11900989	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16852996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16852998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57291658	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57540214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:167988800-167991000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:167989200-167998600	Weak transcription	Left Ventricle	heart
5	chr2:167989400-167993400	Weak transcription	Psoas Muscle	Psoas
6	chr2:167989800-167991000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:167989800-167993400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:167989800-167994200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:167990000-167991000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:167990000-167991200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:167990000-167991800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:167990200-167991600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:167990200-167992200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:167990200-167992400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:167990200-167992600	Enhancers	HMEC	breast
16	chr2:167990200-167992600	Enhancers	NHDF-Ad	bronchial
17	chr2:167990200-167992600	Enhancers	Osteobl	bone
18	chr2:167990200-167995200	Enhancers	NHLF	lung
19	chr2:167990400-167991400	Weak transcription	Fetal Thymus	thymus
20	chr2:167990400-167993400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr2:167990400-167996600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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