Variant report

Variant	rs16852996
Chromosome Location	chr2:167990190-167990191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11900989	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16852998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57291658	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57540214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60303897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:167985400-167991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:167988600-167990400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr2:167988600-167990400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr2:167988800-167991000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:167989000-167990400	Enhancers	Pancreas	Pancrea
7	chr2:167989200-167990200	Weak transcription	HMEC	breast
8	chr2:167989200-167998600	Weak transcription	Left Ventricle	heart
9	chr2:167989400-167993400	Weak transcription	Psoas Muscle	Psoas
10	chr2:167989800-167990400	Enhancers	Fetal Thymus	thymus
11	chr2:167989800-167991000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:167989800-167993400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:167989800-167994200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:167990000-167991000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:167990000-167991200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr2:167990000-167991800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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