Variant report

Variant	rs16853036
Chromosome Location	chr2:168001470-168001471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11900989	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap]
rs16852998	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];0.90[TSI][hapmap];0.86[YRI][hapmap]
rs6432982	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6432983	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6740242	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73029706	0.96[EUR][1000 genomes]
rs7575856	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7604068	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167999400-168002200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:167999600-168002400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:167999800-168001600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
6	chr2:168000600-168003200	Weak transcription	HSMM	muscle
7	chr2:168001000-168008600	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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