Variant report

Variant	rs6740242
Chromosome Location	chr2:167981617-167981618
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11900989	1.00[CEU][hapmap]
rs16852932	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs16852940	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs16852998	1.00[CEU][hapmap]
rs16853036	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6432982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs6432983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs6738801	0.82[CHB][hapmap]
rs73029706	0.94[EUR][1000 genomes]
rs73972205	0.80[ASN][1000 genomes]
rs7575856	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7586191	1.00[YRI][hapmap]
rs7604068	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7607326	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167980200-167983600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:167980400-167983600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:167980600-167984200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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