Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr15:79106160-79106480	K562	blood:	n/a	chr15:79106353-79106366

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79105202..79107134-chrX:78755858..78757584,2	MCF-7	breast:
2	chr15:79105247..79107755-chr15:79157087..79159923,2	MCF-7	breast:

Variant related genes	Relation type
ADAMTS7	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11630027	0.93[EUR][1000 genomes]
rs12900168	0.81[JPT][hapmap]
rs12905740	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs1564499	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1564500	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs16970103	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1976007	0.81[EUR][1000 genomes]
rs1994017	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs28542482	0.94[EUR][1000 genomes]
rs2904228	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs3743056	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs3743057	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3784323	0.85[CHB][hapmap]
rs3971703	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7171916	0.82[JPT][hapmap]
rs7182809	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7183621	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029039	0.93[EUR][1000 genomes]
rs8038189	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8042170	0.92[EUR][1000 genomes]
rs922693	0.95[CEU][hapmap];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79104800-79106800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:79104800-79117800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:79104800-79117800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:79105000-79106800	Weak transcription	Fetal Brain Female	brain
5	chr15:79105000-79108400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:79105000-79110800	Weak transcription	Right Atrium	heart
7	chr15:79105000-79117800	Weak transcription	HSMMtube	muscle
8	chr15:79105000-79118000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:79105200-79110200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:79105200-79118000	Weak transcription	Right Ventricle	heart

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