Variant report

Variant	rs7182809
Chromosome Location	chr15:79105106-79105107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79102834..79106085-chr15:79164025..79165931,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12900168	0.81[JPT][hapmap]
rs1383636	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1564500	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs16970103	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2904228	0.81[CEU][hapmap]
rs35969124	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3743056	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs3743057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3784323	0.85[CHB][hapmap]
rs3971703	0.93[ASN][1000 genomes]
rs7171916	0.82[JPT][hapmap]
rs7183621	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8038189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3354433	chr15:79102422-79105270	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3334366	chr15:79102897-79105495	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79103800-79105200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:79103800-79105400	Enhancers	Spleen	Spleen
3	chr15:79104200-79106000	Weak transcription	Fetal Kidney	kidney
4	chr15:79104400-79105200	Enhancers	Left Ventricle	heart
5	chr15:79104400-79105200	Enhancers	Lung	lung
6	chr15:79104600-79105200	Enhancers	Brain Anterior Caudate	brain
7	chr15:79104600-79105200	Enhancers	Brain Hippocampus Middle	brain
8	chr15:79104600-79105200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr15:79104600-79105200	Enhancers	Right Ventricle	heart
10	chr15:79104600-79105400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:79104800-79105200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr15:79104800-79105400	Enhancers	Brain Cingulate Gyrus	brain
13	chr15:79104800-79105400	Enhancers	Gastric	stomach
14	chr15:79104800-79106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:79104800-79106800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:79104800-79117800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:79104800-79117800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:79105000-79105200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:79105000-79106800	Weak transcription	Fetal Brain Female	brain
20	chr15:79105000-79108400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:79105000-79110800	Weak transcription	Right Atrium	heart
22	chr15:79105000-79117800	Weak transcription	HSMMtube	muscle
23	chr15:79105000-79118000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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