Variant report

Variant	rs35969124
Chromosome Location	chr15:79104793-79104794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:79102454-79104826	SK-N-SH	brain:	n/a	chr15:79104011-79104024 chr15:79104004-79104025 chr15:79102942-79102951 chr15:79104009-79104027 chr15:79104011-79104024 chr15:79102942-79102955 chr15:79104014-79104027 chr15:79104010-79104026
2	MAZ	chr15:79102260-79104839	IMR90	lung:	n/a	chr15:79102334-79102343

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79102834..79106085-chr15:79164025..79165931,3	MCF-7	breast:

Variant related genes	Relation type
ADAMTS7	TF binding region
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7182809	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8029039	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3354433	chr15:79102422-79105270	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3334366	chr15:79102897-79105495	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79102800-79104800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr15:79103800-79104800	Enhancers	Fetal Brain Male	brain
3	chr15:79103800-79105200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:79103800-79105400	Enhancers	Spleen	Spleen
5	chr15:79104000-79104800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:79104000-79104800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:79104000-79104800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:79104000-79104800	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr15:79104000-79104800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
10	chr15:79104000-79104800	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr15:79104200-79104800	Bivalent Enhancer	Primary B cells from cord blood	blood
12	chr15:79104200-79104800	Flanking Active TSS	Brain Cingulate Gyrus	brain
13	chr15:79104200-79104800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
14	chr15:79104200-79104800	Enhancers	Esophagus	oesophagus
15	chr15:79104200-79104800	Enhancers	Fetal Lung	lung
16	chr15:79104200-79104800	Flanking Active TSS	Ovary	ovary
17	chr15:79104200-79104800	Flanking Active TSS	GM12878-XiMat	blood
18	chr15:79104200-79104800	Flanking Active TSS	HSMMtube	muscle
19	chr15:79104200-79105000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:79104200-79105000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
21	chr15:79104200-79106000	Weak transcription	Fetal Kidney	kidney
22	chr15:79104400-79104800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
23	chr15:79104400-79104800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:79104400-79104800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr15:79104400-79104800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
26	chr15:79104400-79104800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
27	chr15:79104400-79104800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr15:79104400-79104800	Bivalent Enhancer	Placenta	Placenta
29	chr15:79104400-79104800	Bivalent Enhancer	Fetal Thymus	thymus
30	chr15:79104400-79104800	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
31	chr15:79104400-79104800	Enhancers	HMEC	breast
32	chr15:79104400-79104800	Enhancers	HUVEC	blood vessel
33	chr15:79104400-79104800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
34	chr15:79104400-79104800	Enhancers	NHDF-Ad	bronchial
35	chr15:79104400-79105000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:79104400-79105000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr15:79104400-79105000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr15:79104400-79105000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:79104400-79105000	Enhancers	Fetal Heart	heart
40	chr15:79104400-79105200	Enhancers	Left Ventricle	heart
41	chr15:79104400-79105200	Enhancers	Lung	lung
42	chr15:79104600-79104800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr15:79104600-79104800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:79104600-79104800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
45	chr15:79104600-79104800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:79104600-79104800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:79104600-79104800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:79104600-79104800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:79104600-79104800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:79104600-79104800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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