Variant report

Variant	rs1384853
Chromosome Location	chr13:61753645-61753646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17833594	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175953	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3127277	0.81[EUR][1000 genomes]
rs7997602	1.00[ASN][1000 genomes]
rs9317162	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539055	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539057	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598241	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61750400-61754200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:61752000-61753800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr13:61753000-61755200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:61753400-61753800	Enhancers	Stomach Smooth Muscle	stomach
5	chr13:61753400-61754000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:61753400-61754000	Enhancers	Colon Smooth Muscle	Colon
7	chr13:61753400-61754800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:61753600-61753800	Enhancers	Fetal Stomach	stomach
9	chr13:61753600-61754400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr13:61753600-61754800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr13:61753600-61755000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:61753600-61755000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:61753600-61755000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:61753600-61755000	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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