Variant report
| Variant | rs3127277 |
|---|---|
| Chromosome Location | chr13:61771560-61771561 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11148544 | 0.89[ASN][1000 genomes] |
| rs11840464 | 0.89[ASN][1000 genomes] |
| rs12428507 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1384853 | 0.81[EUR][1000 genomes] |
| rs1514550 | 0.89[ASN][1000 genomes] |
| rs2137986 | 0.89[ASN][1000 genomes] |
| rs3102187 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3102189 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3102190 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3102191 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3127296 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3127300 | 0.85[EUR][1000 genomes] |
| rs3127301 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3127302 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3127306 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7317870 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9539055 | 0.81[EUR][1000 genomes] |
| rs9539057 | 0.83[EUR][1000 genomes] |
| rs9598241 | 0.83[EUR][1000 genomes] |
| rs9598244 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9598245 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs963838 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832627 | chr13:61642811-61829217 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3444432 | chr13:61665252-61781081 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900243 | chr13:61711163-61799269 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv900244 | chr13:61769349-61856666 | Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61769600-61776200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
