Variant report

Variant	rs1384864
Chromosome Location	chr4:96341788-96341789
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1872130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2054676	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs72659968	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs900617	1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96331200-96345800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96333600-96348800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:96334600-96353000	Weak transcription	Fetal Kidney	kidney
4	chr4:96339200-96347400	Weak transcription	Brain Angular Gyrus	brain
5	chr4:96339400-96347600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:96340200-96343000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:96340600-96343000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:96341000-96342400	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:96341000-96342800	Weak transcription	Brain Substantia Nigra	brain
10	chr4:96341400-96343000	Weak transcription	Fetal Lung	lung
11	chr4:96341600-96349600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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