Variant report

Variant	rs72659968
Chromosome Location	chr4:96337934-96337935
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1384864	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1872130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2054676	0.92[EUR][1000 genomes]
rs900617	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96331200-96345800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96332400-96341000	Enhancers	Brain Hippocampus Middle	brain
3	chr4:96332800-96338200	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:96333400-96338400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:96333600-96339400	Weak transcription	Right Atrium	heart
6	chr4:96333600-96348800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:96334600-96353000	Weak transcription	Fetal Kidney	kidney
8	chr4:96336000-96338800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:96336800-96339200	Enhancers	Brain Angular Gyrus	brain
10	chr4:96337000-96339000	Enhancers	Brain Anterior Caudate	brain
11	chr4:96337400-96338200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:96337400-96338200	Enhancers	Fetal Lung	lung
13	chr4:96337400-96338600	Weak transcription	Brain Substantia Nigra	brain
14	chr4:96337800-96338000	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links