Variant report

Variant	rs1384866
Chromosome Location	chr4:96354321-96354322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1384867	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72659973	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv879626	chr4:96347978-96388651	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96350800-96384400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96351200-96361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:96351400-96359600	Weak transcription	Fetal Lung	lung
4	chr4:96352800-96354600	Enhancers	Brain Hippocampus Middle	brain
5	chr4:96353200-96356800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr4:96353600-96354400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:96353600-96354400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:96353800-96361000	Weak transcription	Aorta	Aorta
9	chr4:96354000-96355800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:96354000-96359600	Weak transcription	Fetal Kidney	kidney
11	chr4:96354000-96361000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:96354000-96363000	Weak transcription	Brain Angular Gyrus	brain
13	chr4:96354200-96355000	Weak transcription	Brain Substantia Nigra	brain
14	chr4:96354200-96360000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:96354200-96360800	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links