Variant report

Variant	rs72659973
Chromosome Location	chr4:96349223-96349224
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1384866	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1384867	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv879626	chr4:96347978-96388651	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96334600-96353000	Weak transcription	Fetal Kidney	kidney
2	chr4:96341600-96349600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:96342200-96349600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:96348000-96351000	Weak transcription	Fetal Brain Male	brain
5	chr4:96348000-96351400	Enhancers	Brain Anterior Caudate	brain
6	chr4:96348200-96349400	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:96348400-96349400	Weak transcription	Brain Angular Gyrus	brain
8	chr4:96348400-96349400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:96348400-96349400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:96348400-96349400	Weak transcription	Brain Substantia Nigra	brain
11	chr4:96348400-96349800	Enhancers	Dnd41	blood
12	chr4:96348600-96349400	Enhancers	Fetal Lung	lung
13	chr4:96349000-96349400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:96349000-96351000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:96349200-96350800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:96349200-96351000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:96349200-96351400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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