Variant report

Variant	rs1384970
Chromosome Location	chr3:53445491-53445492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11130368	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12488068	0.87[AMR][1000 genomes]
rs12491071	0.87[AMR][1000 genomes]
rs12492748	0.87[AMR][1000 genomes]
rs12493165	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12494167	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12631120	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17053081	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1961499	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28481733	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876801	chr3:53325905-53467506	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv876802	chr3:53325905-53470863	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53445200-53446200	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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