Variant report
| Variant | rs1961499 |
|---|---|
| Chromosome Location | chr3:53423017-53423018 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:53416043..53418102-chr3:53422087..53424377,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000212608 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11130368 | 0.81[AMR][1000 genomes] |
| rs11915147 | 0.81[AMR][1000 genomes] |
| rs12487816 | 0.81[AMR][1000 genomes] |
| rs12488068 | 0.81[AMR][1000 genomes] |
| rs12488901 | 0.81[AMR][1000 genomes] |
| rs12491071 | 0.81[AMR][1000 genomes] |
| rs12491594 | 0.81[AMR][1000 genomes] |
| rs12492748 | 0.81[AMR][1000 genomes] |
| rs12493165 | 0.87[AMR][1000 genomes] |
| rs12494167 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12496449 | 0.81[AMR][1000 genomes] |
| rs12496915 | 0.81[AMR][1000 genomes] |
| rs12631120 | 1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1384970 | 0.93[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17053081 | 0.81[AMR][1000 genomes] |
| rs2128710 | 0.81[AMR][1000 genomes] |
| rs28481733 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876801 | chr3:53325905-53467506 | Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv876802 | chr3:53325905-53470863 | Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
