Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1156545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1351954	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1385492	0.83[EUR][1000 genomes]
rs1385493	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs1385497	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1385498	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1485298	0.95[YRI][hapmap]
rs1872424	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2242313	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs2247769	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450058	0.95[YRI][hapmap]
rs2450072	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2450076	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2450080	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2465383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465385	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2465390	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2465395	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7813952	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs996789	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120078200-120080000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:120078800-120080600	Enhancers	Fetal Stomach	stomach
3	chr8:120079000-120080600	Enhancers	Fetal Lung	lung
4	chr8:120079200-120080000	Enhancers	HUVEC	blood vessel
5	chr8:120079200-120080600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:120079400-120081000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
7	chr8:120079600-120080000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:120079800-120080000	Enhancers	Hela-S3	cervix
9	chr8:120079800-120080400	Active TSS	Placenta	Placenta
10	chr8:120079800-120080600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:120079800-120080800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:120079800-120081000	Enhancers	Adipose Nuclei	Adipose

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