Variant report
| Variant | rs2465395 |
|---|---|
| Chromosome Location | chr8:120084939-120084940 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1156545 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1351954 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1385492 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1385493 | 0.90[EUR][1000 genomes] |
| rs1385496 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1385497 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1961996 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2242313 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2247769 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2450061 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2450072 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2450076 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2450080 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2465383 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2465385 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2465387 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2465390 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2465393 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6469811 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7388447 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7813952 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7827224 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs996789 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868916 | chr8:119911943-120762250 | Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | esv2758169 | chr8:119943309-120275750 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | esv2759639 | chr8:119943309-120275750 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:120080600-120085200 | Weak transcription | Fetal Stomach | stomach |
| 2 | chr8:120084600-120095200 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
