Variant report
| Variant | rs1385778 |
|---|---|
| Chromosome Location | chr2:141279346-141279347 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10928749 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1113353 | 0.95[CEU][hapmap] |
| rs11887888 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs12616000 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12692055 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12692056 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1385765 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1385766 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1385775 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs1385776 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1463615 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs1485850 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1485851 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1542655 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1601481 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1601484 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs2171107 | 0.94[CHB][hapmap];0.95[JPT][hapmap] |
| rs2380883 | 0.94[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs4422104 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4439899 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4583394 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4588124 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4954672 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6430904 | 0.95[CHB][hapmap];0.90[JPT][hapmap] |
| rs6430905 | 0.88[CHB][hapmap];0.94[JPT][hapmap] |
| rs7609056 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756334 | chr2:141166521-141285622 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| 2 | nsv459518 | chr2:141218933-141282923 | Enhancers Active TSS Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| 3 | nsv583191 | chr2:141218933-141282923 | Enhancers Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
| 4 | nsv433205 | chr2:141270270-141285694 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
