Variant report

Variant	rs2171107
Chromosome Location	chr2:141270270-141270271
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10928749	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap]
rs11887888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12615271	0.95[CEU][hapmap]
rs12692055	0.81[ASN][1000 genomes]
rs12692056	0.82[ASN][1000 genomes]
rs1385765	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1385766	0.83[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap]
rs1385775	0.95[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs1385776	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap]
rs1385778	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1463614	0.96[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1463615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1485850	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1485851	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1542655	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1601481	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1601484	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2380883	0.85[CHB][hapmap]
rs4422104	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs4439899	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4583394	0.91[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap]
rs4588124	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs4954672	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6430904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs6430905	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7609056	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv459518	chr2:141218933-141282923	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv583191	chr2:141218933-141282923	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv433205	chr2:141270270-141285694	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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