Variant report

Variant	rs1385784
Chromosome Location	chr4:152883896-152883897
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17028462	1.00[AMR][1000 genomes]
rs55943229	1.00[AMR][1000 genomes]
rs58239760	1.00[AMR][1000 genomes]
rs61484042	1.00[AMR][1000 genomes]
rs72953008	1.00[AMR][1000 genomes]
rs72953014	1.00[AMR][1000 genomes]
rs72953021	1.00[AMR][1000 genomes]
rs73865606	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152879000-152886400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:152881800-152884000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:152882000-152884000	Enhancers	NHEK	skin
4	chr4:152882200-152884200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr4:152882600-152884200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:152882800-152884000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:152883400-152884200	Enhancers	Hela-S3	cervix
8	chr4:152883600-152886400	Weak transcription	Fetal Brain Male	brain
9	chr4:152883800-152884000	Enhancers	HSMMtube	muscle
10	chr4:152883800-152887800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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