Variant report

Variant	rs61484042
Chromosome Location	chr4:152986182-152986183
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1385784	1.00[AMR][1000 genomes]
rs17028462	1.00[AMR][1000 genomes]
rs55943229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58239760	1.00[AMR][1000 genomes]
rs72953008	1.00[AMR][1000 genomes]
rs72953014	1.00[AMR][1000 genomes]
rs72953021	1.00[AMR][1000 genomes]
rs72953090	1.00[AMR][1000 genomes]
rs72953091	1.00[AMR][1000 genomes]
rs72953095	1.00[AMR][1000 genomes]
rs73865606	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv461679	chr4:152935555-152992741	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv595734	chr4:152935555-152992741	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152983800-153000800	Enhancers	Fetal Thymus	thymus
2	chr4:152984000-152986600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:152984000-152988000	Enhancers	Dnd41	blood
4	chr4:152984000-152988200	Enhancers	Thymus	Thymus
5	chr4:152984200-152986800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:152984200-152987200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr4:152984400-152986200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr4:152984400-152987600	Enhancers	Fetal Muscle Leg	muscle
9	chr4:152984600-152986400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr4:152984800-152986200	Enhancers	HSMM	muscle
11	chr4:152984800-152986600	Enhancers	Fetal Kidney	kidney
12	chr4:152984800-152986800	Enhancers	Brain Germinal Matrix	brain
13	chr4:152984800-152986800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr4:152984800-152987000	Enhancers	Fetal Heart	heart
15	chr4:152985000-152986200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:152985200-152990000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:152985200-152993400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:152985200-152996200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr4:152985200-153000000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:152985400-152986200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:152985400-152986200	Enhancers	NHEK	skin
22	chr4:152985400-152986400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:152985400-152986400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr4:152985400-152986400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:152985400-152986400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr4:152985400-152986400	Weak transcription	Left Ventricle	heart
27	chr4:152985400-152986600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:152985400-152987000	Enhancers	HSMMtube	muscle
29	chr4:152985600-152986400	Weak transcription	Psoas Muscle	Psoas
30	chr4:152985600-152986800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr4:152985600-152987200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:152985800-152986600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr4:152985800-152986800	Weak transcription	Primary T cells from cord blood	blood
34	chr4:152986000-152986400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr4:152986000-152986400	Enhancers	Pancreatic Islets	Pancreatic Islet

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