Variant report

Variant	rs138580746
Chromosome Location	chr22:31705675-31705676
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31684965..31688899-chr22:31705650..31709359,6	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LIMK2-2	chr22:31705176-31706049	NONHSAT084875

Variant related genes	Relation type
ENSG00000228839	Chromatin interaction
ENSG00000100100	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058844	chr22:31597104-31725296	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	esv3333136	chr22:31704947-31758417	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31689400-31709000	Weak transcription	Placenta	Placenta
2	chr22:31692600-31709200	Weak transcription	Stomach Mucosa	stomach
3	chr22:31693400-31709200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr22:31693800-31720000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr22:31697000-31709400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr22:31698000-31709200	Weak transcription	Adipose Nuclei	Adipose
7	chr22:31698400-31709200	Weak transcription	Fetal Intestine Small	intestine
8	chr22:31702200-31709400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr22:31703000-31709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr22:31703200-31706400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr22:31704200-31709200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr22:31704800-31708800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr22:31704800-31709000	Weak transcription	Primary T cells from cord blood	blood
14	chr22:31704800-31709000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr22:31704800-31709200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr22:31704800-31711400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr22:31704800-31711600	Weak transcription	Primary B cells from cord blood	blood
18	chr22:31704800-31720200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr22:31705000-31708800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr22:31705000-31709000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr22:31705400-31707600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr22:31705600-31705800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr22:31705600-31706200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr22:31705600-31709000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr22:31705600-31709000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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