Variant report

Variant	rs1386234
Chromosome Location	chr11:24911312-24911313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:24911307-24911451	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
LUZP2	TF binding region

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10082638	0.88[EUR][1000 genomes]
rs10082639	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10742053	0.84[EUR][1000 genomes]
rs10742054	0.85[EUR][1000 genomes]
rs10742055	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10767265	0.89[EUR][1000 genomes]
rs10767267	0.90[EUR][1000 genomes]
rs10767268	0.91[EUR][1000 genomes]
rs10767271	0.91[EUR][1000 genomes]
rs10767272	0.84[EUR][1000 genomes]
rs10767273	0.88[EUR][1000 genomes]
rs10767274	0.88[EUR][1000 genomes]
rs10767275	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10834521	0.90[EUR][1000 genomes]
rs10834522	0.90[EUR][1000 genomes]
rs10834527	0.88[CEU][hapmap]
rs10834533	0.93[EUR][1000 genomes]
rs10834535	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10834537	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10834538	0.84[EUR][1000 genomes]
rs10834539	0.87[EUR][1000 genomes]
rs10834540	0.85[EUR][1000 genomes]
rs10834541	0.85[EUR][1000 genomes]
rs10834542	0.85[EUR][1000 genomes]
rs10834543	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11028244	0.90[EUR][1000 genomes]
rs11028247	0.94[EUR][1000 genomes]
rs11028248	0.91[EUR][1000 genomes]
rs11028249	0.91[EUR][1000 genomes]
rs11028267	0.82[EUR][1000 genomes]
rs11602437	0.84[EUR][1000 genomes]
rs12273099	0.91[EUR][1000 genomes]
rs12785676	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1386231	0.91[EUR][1000 genomes]
rs1386232	0.91[EUR][1000 genomes]
rs1386235	0.84[CEU][hapmap]
rs2129356	0.91[EUR][1000 genomes]
rs2129357	0.91[EUR][1000 genomes]
rs2171256	0.89[EUR][1000 genomes]
rs2171257	0.87[EUR][1000 genomes]
rs2403988	0.91[EUR][1000 genomes]
rs2403989	0.91[EUR][1000 genomes]
rs2403990	0.86[EUR][1000 genomes]
rs2403991	0.91[EUR][1000 genomes]
rs2896716	0.91[EUR][1000 genomes]
rs2896717	0.91[EUR][1000 genomes]
rs3598	0.89[EUR][1000 genomes]
rs3929310	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3958180	0.91[EUR][1000 genomes]
rs3992976	0.91[EUR][1000 genomes]
rs4133672	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4370935	0.91[EUR][1000 genomes]
rs4922701	0.87[EUR][1000 genomes]
rs61892071	0.89[EUR][1000 genomes]
rs7111460	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7394985	0.87[EUR][1000 genomes]
rs7479243	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7479302	0.88[EUR][1000 genomes]
rs7479940	0.84[EUR][1000 genomes]
rs749149	0.91[EUR][1000 genomes]
rs749150	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs749151	0.91[EUR][1000 genomes]
rs751170	0.94[EUR][1000 genomes]
rs766470	0.88[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap];0.93[EUR][1000 genomes]
rs7932867	0.90[EUR][1000 genomes]
rs901436	0.91[EUR][1000 genomes]
rs9645612	0.83[EUR][1000 genomes]
rs972042	0.87[EUR][1000 genomes]
rs972043	0.86[EUR][1000 genomes]
rs972044	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1053055	chr11:24700012-25293551	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv34111	chr11:24802669-25090774	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34012	chr11:24831174-25090774	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv553827	chr11:24858636-25379281	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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