Variant report

Variant	rs10834540
Chromosome Location	chr11:24922617-24922618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10082638	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10082639	0.92[EUR][1000 genomes]
rs10742053	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10742054	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10742055	0.88[EUR][1000 genomes]
rs10767265	0.87[EUR][1000 genomes]
rs10767267	0.87[EUR][1000 genomes]
rs10767268	0.88[EUR][1000 genomes]
rs10767271	0.91[EUR][1000 genomes]
rs10767272	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10767273	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10767274	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10767275	0.90[EUR][1000 genomes]
rs10834521	0.88[EUR][1000 genomes]
rs10834522	0.88[EUR][1000 genomes]
rs10834533	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10834535	0.93[EUR][1000 genomes]
rs10834537	0.93[EUR][1000 genomes]
rs10834538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834539	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10834541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834542	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834543	0.87[EUR][1000 genomes]
rs11028244	0.88[EUR][1000 genomes]
rs11028247	0.84[EUR][1000 genomes]
rs11028248	0.87[EUR][1000 genomes]
rs11028249	0.87[EUR][1000 genomes]
rs11028267	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11602437	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273099	0.87[EUR][1000 genomes]
rs12785676	0.84[EUR][1000 genomes]
rs1386231	0.88[EUR][1000 genomes]
rs1386232	0.88[EUR][1000 genomes]
rs1386234	0.85[EUR][1000 genomes]
rs2129356	0.87[EUR][1000 genomes]
rs2129357	0.87[EUR][1000 genomes]
rs2171256	0.85[EUR][1000 genomes]
rs2171257	0.87[EUR][1000 genomes]
rs2403988	0.87[EUR][1000 genomes]
rs2403989	0.87[EUR][1000 genomes]
rs2403990	0.83[EUR][1000 genomes]
rs2403991	0.87[EUR][1000 genomes]
rs2896716	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2896717	0.87[EUR][1000 genomes]
rs3598	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3929310	0.81[EUR][1000 genomes]
rs3958180	0.87[EUR][1000 genomes]
rs3992976	0.87[EUR][1000 genomes]
rs4133672	0.81[EUR][1000 genomes]
rs4370935	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4922701	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61892071	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7111460	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7394985	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7479243	0.92[EUR][1000 genomes]
rs7479302	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7479940	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs749149	0.88[EUR][1000 genomes]
rs749150	0.84[EUR][1000 genomes]
rs749151	0.88[EUR][1000 genomes]
rs751170	0.85[EUR][1000 genomes]
rs766470	0.92[EUR][1000 genomes]
rs7932867	0.86[EUR][1000 genomes]
rs901436	0.88[EUR][1000 genomes]
rs972042	0.82[EUR][1000 genomes]
rs972043	0.83[EUR][1000 genomes]
rs972044	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1053055	chr11:24700012-25293551	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv34111	chr11:24802669-25090774	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34012	chr11:24831174-25090774	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv553827	chr11:24858636-25379281	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv897100	chr11:24913489-25085296	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv897101	chr11:24913489-25088584	Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv897102	chr11:24913489-25140302	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv897103	chr11:24913489-25145902	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv897104	chr11:24913489-25160036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv897105	chr11:24913489-25169641	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24917200-24931400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:24921800-24922800	Flanking Active TSS	Liver	Liver
3	chr11:24922400-24922800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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