Variant report

Variant	rs1387528
Chromosome Location	chr4:118498124-118498125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDST3-4	chr4:118498122-118498145	ENSG00000236922.5

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11098396	0.93[ASN][1000 genomes]
rs11562892	0.94[ASN][1000 genomes]
rs11733276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17862040	0.89[ASN][1000 genomes]
rs17862950	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17863861	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs17863866	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17867500	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17867501	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1948233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2245104	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2245110	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2245138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2245142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2245255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2245313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2245321	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2245354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2635249	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2635360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2635362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2635363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2635364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3811753	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3811755	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6534043	0.80[ASN][1000 genomes]
rs923442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs923443	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879831	chr4:118470151-118502728	Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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