Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11098396	0.86[ASN][1000 genomes]
rs11733276	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs11734303	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1387528	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs17862950	0.87[CHB][hapmap]
rs17863861	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs17863866	0.87[CHB][hapmap]
rs17867500	0.87[CHB][hapmap]
rs17867501	0.87[CHB][hapmap]
rs1948233	0.87[CHB][hapmap];0.86[CHD][hapmap];0.81[ASN][1000 genomes]
rs2245104	0.87[CHB][hapmap];0.86[CHD][hapmap]
rs2245110	0.91[CHB][hapmap]
rs2245138	0.87[CHB][hapmap];0.86[CHD][hapmap];0.81[ASN][1000 genomes]
rs2245142	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2245255	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2245313	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2245321	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2245354	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2635192	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2635223	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2635249	0.87[CHB][hapmap]
rs2635360	0.87[CHB][hapmap]
rs2635362	0.87[CHB][hapmap]
rs2635363	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2635364	0.87[CHB][hapmap];0.86[CHD][hapmap];0.81[ASN][1000 genomes]
rs3811753	0.86[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap]
rs3811755	0.87[CHB][hapmap];0.88[CHD][hapmap]
rs923442	0.87[CHB][hapmap]
rs923443	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879832	chr4:118502728-118536051	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1825113	chr4:118505427-118544235	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879833	chr4:118510812-118556306	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6534043	SPEM1	trans	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118518400-118522400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:118518600-118520400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:118518600-118521200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:118519000-118520200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr4:118519000-118520400	Enhancers	HUES6 Cell Line	embryonic stem cell

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