Variant report

Variant	rs138762859
Chromosome Location	chr6:164435642-164435643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830858	chr6:164296054-164455743	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1019703	chr6:164424683-164488780	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1796945	chr6:164430826-164448156	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3393946	chr6:164435162-164439360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164431600-164435800	Weak transcription	Right Atrium	heart
2	chr6:164431600-164442600	Weak transcription	Right Ventricle	heart
3	chr6:164432000-164436000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:164432000-164437200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:164434600-164436000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:164434800-164436800	Enhancers	Fetal Muscle Leg	muscle
7	chr6:164434800-164438200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:164435000-164438000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:164435200-164436600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:164435400-164436000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:164435400-164436000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:164435400-164436600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:164435400-164437200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:164435600-164435800	Active TSS	Brain Hippocampus Middle	brain
15	chr6:164435600-164435800	Flanking Active TSS	Brain Substantia Nigra	brain
16	chr6:164435600-164435800	Enhancers	Stomach Smooth Muscle	stomach
17	chr6:164435600-164436000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:164435600-164436000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:164435600-164436000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:164435600-164436000	Active TSS	Brain Angular Gyrus	brain
21	chr6:164435600-164436000	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr6:164435600-164436000	Flanking Active TSS	Fetal Muscle Trunk	muscle
23	chr6:164435600-164436000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:164435600-164436600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:164435600-164436800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:164435600-164436800	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:164435600-164436800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:164435600-164436800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:164435600-164437200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:164435600-164437400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:164435600-164437800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:164435600-164439200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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