Variant report

Variant	rs138937139
Chromosome Location	chr15:77630034-77630035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1040430	chr15:77584375-77676957	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv1836778	chr15:77608747-77694607	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv1795063	chr15:77628696-77697976	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77603400-77633400	Weak transcription	Primary B cells from cord blood	blood
2	chr15:77619000-77630200	Weak transcription	Brain Angular Gyrus	brain
3	chr15:77620000-77645200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr15:77620800-77639200	Weak transcription	Osteobl	bone
5	chr15:77622000-77636800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:77622000-77645200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:77625600-77630400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:77625600-77633000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:77625600-77633800	Weak transcription	Primary T cells from cord blood	blood
10	chr15:77626400-77634000	Weak transcription	Dnd41	blood
11	chr15:77627200-77630600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr15:77627400-77657400	Weak transcription	Aorta	Aorta
13	chr15:77628200-77630400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:77628200-77633400	Weak transcription	Psoas Muscle	Psoas
15	chr15:77628200-77634800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:77628200-77638600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:77628200-77639200	Weak transcription	Fetal Lung	lung
18	chr15:77628200-77644600	Weak transcription	Right Atrium	heart
19	chr15:77628200-77655400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:77628200-77655600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:77628400-77639000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:77628600-77630400	Weak transcription	NHDF-Ad	bronchial
23	chr15:77628600-77634600	Weak transcription	Fetal Muscle Leg	muscle
24	chr15:77628600-77635000	Weak transcription	Brain Anterior Caudate	brain
25	chr15:77628600-77646600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:77628800-77630200	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:77628800-77630400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:77628800-77630400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr15:77628800-77631400	Weak transcription	Left Ventricle	heart
30	chr15:77628800-77633400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:77628800-77639400	Weak transcription	K562	blood
32	chr15:77628800-77645200	Weak transcription	NHLF	lung
33	chr15:77628800-77645400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:77629000-77634600	Weak transcription	Fetal Heart	heart
35	chr15:77629000-77639200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:77629600-77630600	Enhancers	Brain Cingulate Gyrus	brain
37	chr15:77630000-77630800	Enhancers	Brain Substantia Nigra	brain

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