Variant report

Variant	rs1390961
Chromosome Location	chr4:77807779-77807780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17002263	1.00[AMR][1000 genomes]
rs2010866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741133	1.00[AMR][1000 genomes]
rs7662415	1.00[AMR][1000 genomes]
rs7666863	1.00[AMR][1000 genomes]
rs7669100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829973	chr4:77684251-77877361	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv1810313	chr4:77778670-77902099	Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3398843	chr4:77806228-77809926	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77802800-77813600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:77804000-77816600	Weak transcription	Colonic Mucosa	Colon
3	chr4:77804600-77808400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:77805000-77813600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:77805000-77816200	Weak transcription	Gastric	stomach
6	chr4:77805200-77808600	Weak transcription	Right Atrium	heart
7	chr4:77806400-77809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:77806400-77813800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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