Variant report

Variant	rs2010866
Chromosome Location	chr4:77804644-77804645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1390961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17002263	1.00[AMR][1000 genomes]
rs61741133	1.00[AMR][1000 genomes]
rs7662415	1.00[AMR][1000 genomes]
rs7666863	1.00[AMR][1000 genomes]
rs7669100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829973	chr4:77684251-77877361	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv1810313	chr4:77778670-77902099	Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77802800-77805400	Weak transcription	Fetal Intestine Large	intestine
2	chr4:77802800-77813600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:77803800-77805200	Enhancers	HUVEC	blood vessel
4	chr4:77804000-77816600	Weak transcription	Colonic Mucosa	Colon
5	chr4:77804200-77805000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:77804200-77805600	Enhancers	NH-A	brain
7	chr4:77804400-77805600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:77804600-77804800	Enhancers	NHLF	lung
9	chr4:77804600-77808400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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