Variant report

Variant	rs1393378
Chromosome Location	chr3:79927493-79927494
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11916974	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12714495	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393371	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2625547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2625551	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2653388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2653389	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2653390	0.89[EUR][1000 genomes]
rs2653391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856377	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548666	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767958	1.00[ASN][1000 genomes]
rs6788310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427425	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634035	1.00[EUR][1000 genomes]
rs9309839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999796	chr3:79762461-79938163	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv877029	chr3:79824232-79947253	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv834748	chr3:79828668-79985688	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79922800-79928400	Weak transcription	HUVEC	blood vessel
2	chr3:79923000-79927600	Weak transcription	Hela-S3	cervix
3	chr3:79925000-79933400	Weak transcription	Fetal Heart	heart
4	chr3:79927400-79928000	ZNF genes & repeats	Aorta	Aorta

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