Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11916974	0.89[EUR][1000 genomes]
rs12714495	0.89[EUR][1000 genomes]
rs13096341	0.89[EUR][1000 genomes]
rs1354213	0.89[EUR][1000 genomes]
rs1354214	0.89[EUR][1000 genomes]
rs1393363	0.89[EUR][1000 genomes]
rs1393371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1393372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1393378	0.89[EUR][1000 genomes]
rs1502295	0.89[EUR][1000 genomes]
rs1502309	0.89[EUR][1000 genomes]
rs1553339	0.89[EUR][1000 genomes]
rs2036420	0.89[EUR][1000 genomes]
rs2625547	0.89[EUR][1000 genomes]
rs2625551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2653388	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2653389	0.89[EUR][1000 genomes]
rs2653391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4856365	0.89[EUR][1000 genomes]
rs4856376	0.89[EUR][1000 genomes]
rs4856377	0.89[EUR][1000 genomes]
rs6548665	0.89[EUR][1000 genomes]
rs6548666	0.89[EUR][1000 genomes]
rs6788310	0.89[EUR][1000 genomes]
rs6792862	0.89[EUR][1000 genomes]
rs6803538	0.89[EUR][1000 genomes]
rs7427425	0.89[EUR][1000 genomes]
rs7612188	0.89[EUR][1000 genomes]
rs7634035	0.89[EUR][1000 genomes]
rs9309839	0.89[EUR][1000 genomes]
rs9815937	0.89[EUR][1000 genomes]
rs9835932	0.89[EUR][1000 genomes]
rs9859852	0.89[EUR][1000 genomes]
rs9873764	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv834748	chr3:79828668-79985688	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv3889	chr3:79929718-79974707	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79955600-79959600	Weak transcription	Ovary	ovary

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