Variant report

Variant	rs1393915
Chromosome Location	chr3:87975607-87975608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11926472	0.89[EUR][1000 genomes]
rs12490415	0.81[AFR][1000 genomes]
rs12492995	0.89[EUR][1000 genomes]
rs13320429	0.91[AFR][1000 genomes]
rs13324246	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1393916	0.91[AFR][1000 genomes]
rs1465648	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1503430	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1604697	0.92[AFR][1000 genomes]
rs17025160	0.89[ASN][1000 genomes]
rs17025198	0.90[EUR][1000 genomes]
rs17025201	0.88[EUR][1000 genomes]
rs1811618	0.89[ASN][1000 genomes]
rs1821027	0.89[AFR][1000 genomes]
rs1864617	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116145	0.89[EUR][1000 genomes]
rs2163420	0.89[ASN][1000 genomes]
rs28854202	0.89[ASN][1000 genomes]
rs2919272	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2932274	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2932277	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2938268	0.84[ASN][1000 genomes]
rs2938270	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55649543	0.89[ASN][1000 genomes]
rs6551260	0.89[EUR][1000 genomes]
rs6770080	0.89[ASN][1000 genomes]
rs6782603	0.89[ASN][1000 genomes]
rs6790293	0.89[ASN][1000 genomes]
rs6807548	0.86[AFR][1000 genomes]
rs6807663	0.89[ASN][1000 genomes]
rs6809560	0.89[ASN][1000 genomes]
rs72913785	0.89[ASN][1000 genomes]
rs72915609	0.89[ASN][1000 genomes]
rs73847728	0.89[ASN][1000 genomes]
rs73847730	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7434013	0.89[AFR][1000 genomes]
rs7631129	0.89[ASN][1000 genomes]
rs7646120	0.89[ASN][1000 genomes]
rs7646993	0.89[ASN][1000 genomes]
rs7649800	0.89[ASN][1000 genomes]
rs923474	0.93[AFR][1000 genomes]
rs9310058	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9809386	0.81[AFR][1000 genomes]
rs9812937	0.89[ASN][1000 genomes]
rs9816966	0.86[AFR][1000 genomes]
rs9836185	0.88[EUR][1000 genomes]
rs9838596	0.89[ASN][1000 genomes]
rs9839638	0.86[ASN][1000 genomes]
rs9844893	0.88[AFR][1000 genomes]
rs9850490	0.88[EUR][1000 genomes]
rs9853753	0.89[ASN][1000 genomes]
rs9869636	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9872577	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1001572	chr3:87942288-87983962	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1007981	chr3:87949316-88004036	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv527929	chr3:87949733-88003812	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87970800-87980200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:87974400-87980000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr3:87974800-87980200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:87975200-87983200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:87975200-87983200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links