Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88006275..88008008-chr3:88012580..88014514,2	K562	blood:
2	chr3:88006508..88009782-chr3:88012580..88015911,3	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11926472	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12492995	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13324246	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1393915	0.88[EUR][1000 genomes]
rs1465648	0.87[EUR][1000 genomes]
rs1503430	0.85[EUR][1000 genomes]
rs17025198	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025201	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864617	0.87[EUR][1000 genomes]
rs2116145	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2919272	0.85[EUR][1000 genomes]
rs2932274	0.86[EUR][1000 genomes]
rs2932277	0.87[EUR][1000 genomes]
rs2938270	0.88[EUR][1000 genomes]
rs59770732	0.89[ASN][1000 genomes]
rs6551258	0.87[ASN][1000 genomes]
rs6551260	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72917703	0.81[ASN][1000 genomes]
rs73847730	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9310058	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9842136	0.89[ASN][1000 genomes]
rs9850490	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869636	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9879360	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87995600-88011000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:88005000-88011200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:88006200-88008200	Strong transcription	Primary hematopoietic stem cells	blood
4	chr3:88007400-88007800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:88007600-88008000	Enhancers	HUES48 Cell Line	embryonic stem cell

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