Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:88011920..88014768-chr5:138939490..138942300,2	K562	blood:
2	chr3:88006275..88008008-chr3:88012580..88014514,2	K562	blood:
3	chr3:88006508..88009782-chr3:88012580..88015911,3	K562	blood:

Variant related genes	Relation type
ENSG00000131508	Chromatin interaction

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11926472	0.80[ASN][1000 genomes]
rs12492995	0.80[ASN][1000 genomes]
rs17025160	0.93[EUR][1000 genomes]
rs17025198	0.81[ASN][1000 genomes]
rs17025201	0.81[ASN][1000 genomes]
rs1811618	0.93[EUR][1000 genomes]
rs1946570	0.89[EUR][1000 genomes]
rs2116145	0.80[ASN][1000 genomes]
rs2163420	0.93[EUR][1000 genomes]
rs28854202	0.93[EUR][1000 genomes]
rs55649543	0.94[EUR][1000 genomes]
rs59770732	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551258	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6551260	0.81[ASN][1000 genomes]
rs6770080	0.95[EUR][1000 genomes]
rs6782603	0.91[EUR][1000 genomes]
rs6790293	0.95[EUR][1000 genomes]
rs6802936	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6807663	0.95[EUR][1000 genomes]
rs6809560	0.95[EUR][1000 genomes]
rs72913785	0.93[EUR][1000 genomes]
rs72915609	0.95[EUR][1000 genomes]
rs73847728	0.91[EUR][1000 genomes]
rs7631129	0.93[EUR][1000 genomes]
rs7646120	0.93[EUR][1000 genomes]
rs7646993	0.93[EUR][1000 genomes]
rs7649800	0.93[EUR][1000 genomes]
rs9812937	0.93[EUR][1000 genomes]
rs9836185	0.81[ASN][1000 genomes]
rs9838596	0.93[EUR][1000 genomes]
rs9839638	0.95[EUR][1000 genomes]
rs9840236	0.83[EUR][1000 genomes]
rs9842136	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9850490	0.81[ASN][1000 genomes]
rs9853753	0.93[EUR][1000 genomes]
rs9879360	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88012400-88023800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:88013600-88014400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:88014000-88014400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:88014200-88027000	Weak transcription	Primary hematopoietic stem cells	blood

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